BBa_K216006

BBa_K216006 Version 1

Component

Source:
http://parts.igem.org/Part:BBa_K216006
Generated By: https://synbiohub.org/public/igem/igem2sbol/1
Created by: Edinburgh iGEM 2009
Date created: 2009-10-15 11:00:00
Date modified: 2015-05-08 01:11:30

pentaerythritol tetranitrate reductase with native rbs



Types
DnaRegion

Roles
Translational_Unit

engineered_region

Sequences BBa_K216006_sequence (Version 1)

Description

This is the coding sequence for the enzyme pentaerythritol tetranitrate reductase (PETN reductase) of Enterobacter cloacae PB2. This enzyme reductively denitrates nitrate esters such as PETN (pentaerythritol tetranitrate, penthrite) GTN (glycerol trinitrate, nitroglycerine) and EGDN (ethylene glycol dinitrate) yielding the alcohol and nitrite ion. It can also reductively attack nitroaromatic compounds such as TNT (2,4,6-trinitrotoluene) forming initially hydride-Meisenheimer complexes which break down via an unknown route to yield nitrite and non-aromatic products. Reference: Binks, P.R., French, C.E., Nicklin, S., & Bruce, N.C. (1996). Degradation of pentaerythritol tetranitrate by Enterobacter cloacae PB2. Applied and Environmental Microbiology 62(4), 1214-1219. Reference 2: French,C.E., Nicklin,S. and Bruce,N.C. 1996. Sequence and properties of pentaerythritol tetranitrate reductase from Enterobacter cloacae PB2. J. Bacteriol. 178 (22), 6623-6627 (1996).

Notes

No special considerations, but due to an error, the primers were actually designed based on the homologous gene of another strain of Enterobacter cloacae, which has a very similar coding sequence but different sequence in the upstream region. The sequence shown here is the correct sequence determined by sequencing the construct.

Source

This part was amplified from plasmid pONR1 which bears the PETN reductase gene originally cloned from Enterobacter cloacae PB2.

Sequence Annotation Location Component / Role(s)
RBS
Start
stop
PETN reductase coding region
1,3
9,11
1104,1109
9,1106
ribosome_entry_site feature/rbs
start_codon feature/start
stop_codon feature/stop
feature/cds CDS
igem#experience
None
 
igem#sampleStatus
It's complicated
igem#status
Planning
 
synbiohub#ownedBy
user/james
 
synbiohub#ownedBy
user/myers
 
synbiohub#topLevel
BBa_K216006/1