Composite Sequence Pull
Composite Version 1 (Unknown)
When multiple sources where combined to make a new part.

Direct Sequence Pull
direct Version 1 (Unknown)
Used to indicate that a sequence was pulled directly from a source with no alterations made

Sequence Pull with Mutations
mutations Version 1 (Unknown)
Used to indicate that a sequence had mutations added after pulling from the source and before submission

Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Unknown)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission

ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Unknown)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project

Truncated Sequence Pull
Truncated Version 1 (Unknown)
Used to indicate that a sequence was truncated after pulling from the source and before submission

Excel2SBOL
Excel2SBOL_collection Version 1 (Unknown)
A collection of sbol that is used for the excel2sbol library

Codon Optimised Sequence Pull
codon_optimisation Version 1 (Unknown)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission

GC Optimised Sequence Pull
GC_Optimised Version 1 (Unknown)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission

sbks activities
sbksactivities_collection Version 1 (Unknown)
Activities linked to the SBKS project

Altered Sequence Activities
AlteredSequenceActivities_collection Version 1 (Unknown)
A set of activities to point to ways in which sequences have been altered between source and upload

Unknown Alteration Sequence Pull
Unknown Version 1 (Unknown)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown

Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Unknown)
Used to indicate that a sequence was cut out of the plasmid referenced as the source

SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1

SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1

BBa_B0030
BBa_B0030 Version 1 (Component)
RBS.1 (strong) -- modified from R. Weiss

SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.

SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.

BBa_E0430
BBa_E0430 Version 1 (Component)
EYFP (RBS+ LVA- TERM) (B0034.E0030.B0015)

BBa_B0034
BBa_B0034 Version 1 (Component)
RBS (Elowitz 1999) -- defines RBS efficiency

BBa_B0010
BBa_B0010 Version 1 (Component)
T1 from E. coli rrnB

BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7

BBa_K1051006
BBa_K1051006 Version 1 (Component)
Saccharomycescerevisiae TBY-1 terminator with stopcodon

BBa_E0422
BBa_E0422 Version 1 (Component)
ECFP (RBS+ LVA+ TERM) (B0034.E0022.B0015)

BBa_E0420
BBa_E0420 Version 1 (Component)
ECFP (RBS+ LVA- TERM) (B0034.E0020.B0015)

spacer
BBa_B0040 Version 1 (Component)
Spacer.1 (generic)

Lock 1
BBa_J01010 Version 1 (Component)
Riboregulator Lock 1

BBa_E0432
BBa_E0432 Version 1 (Component)
EYFP (RBS+ LVA+ TERM) (B0034.E0032.B0015)

NLS+Term
BBa_K165018 Version 1 (Component)
SV40 nuclear localization sequence + ADH1 transcription terminator

P22 attP
BBa_I11033 Version 1 (Component)
P22 ''attP''

BBa_I732820
BBa_I732820 Version 1 (Component)
LacI (RBS+, TERM+)

BBa_B0015
BBa_B0015 Version 1 (Component)
double terminator (B0010-B0012)

BBa_P0455
BBa_P0455 Version 1 (Component)
RBS.Lambda cI LVA+.Term

Key 1
BBa_J01008 Version 1 (Component)
Riboregulator key 1

BBa_K516022
BBa_K516022 Version 1 (Component)
AiiA protein generator TERM+ RBS+(B0032)

BBa_I712015
BBa_I712015 Version 1 (Component)
HIV-1 protease cleavage site

BBa_K081009
BBa_K081009 Version 1 (Component)
lasI protein generator (TERM-)

BBa_K617004
BBa_K617004 Version 1 (Component)
Lambda attP P'OP

BBa_I732017
BBa_I732017 Version 1 (Component)
lacZ full-length (RBS+ TERM-)

BBa_K081008
BBa_K081008 Version 1 (Component)
luxI protein generator (TERM-)

BBa_K516030
BBa_K516030 Version 1 (Component)
mRFP protein generator TERM+ RBS+(B0030)

BBa_K2071969
BBa_K2071969 Version 1 (Component)
GLD1 is a general reductase, it is characterized in https://microbialcellfactories.biomedcentral.com

BBa_K2071953
BBa_K2071953 Version 1 (Component)
A non-specific phosphotransferase, codon optimized for B.subtilis. Characterized in https://microbia

BBa_K415000
BBa_K415000 Version 1 (Component)
pLux/cI-OR : RBS-mCherry : Term

BBa_B0029
BBa_B0029 Version 1 (Component)
1 bp deletion from B0031