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Public
iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1
Public
Intein_assisted_Bisection_Mapping
Intein_assisted_Bisection_Mapping_collection Version 1 (Unknown)
Split inteins are powerful tools for seamless ligation of synthetic split proteins. Yet, their use remains limited because the already intricate split site identification problem is often complicated by the requirement of extein junction sequences. To address this, we augmented a mini-Mu transposon-based screening approach and devised the intein-assisted bisection mapping (IBM) method. IBM robustly revealed clusters of split sites on five proteins, converting them into AND or NAND logic gates. We further showed that the use of inteins expands functional sequence space for splitting a protein. We also demonstrated the utility of our approach over rational inference of split sites from secondary structure alignment of homologous proteins. Furthermore, the intein inserted at an identified site could be engineered by the transposon again to become partially chemically inducible, and to some extent enabled post-translational tuning on host protein function. Our work offers a generalizable and systematic route towards creating split protein-intein fusions and conditional inteins for protein activity control.
Public
SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1
Public
BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7
Public
luxI
BBa_C0061 Version 1 (Component)
autoinducer synthetase for AHL
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Public
Fur
BO_11498 Version 1 (Component)

Public
mCherry
BBa_J06504 Version 1 (Component)
monomeric RFP optimized for bacteria
Public
hixC
BBa_J44000 Version 1 (Component)
hixC binding site for Salmonella typhimurium Hin recombinase
Public
lasI
BBa_C0078 Version 1 (Component)
autoinducer synthetase for PAI from Pseudomonas aeruginosa
Public
OriTR
BBa_J01003 Version 1 (Component)
OriT-R (Origin of transfer for the R-plasmid nic region)
Public
luxI
BBa_C0161 Version 1 (Component)
autoinducer synthetase for AHL (no LVA)
Public
BBa_K209402
BBa_K209402 Version 1 (Component)
AarI A-B part, signal sequence-FLAG-YFP [SSFYFP]
Public
Fnr
BO_9039 Version 1 (Component)

Public
rhII
BBa_C0070 Version 1 (Component)
autoinducer synthetase for N-butyryl-HSL (BHL) and HHL
Public
iGEM Distributions
iGEMDistributions_collection Version 1 (Collection)
Part distributions for the iGEM competition
Public
lox
BBa_J61046 Version 1 (Component)
[Lox] site for recombination
Public
BBa_J23008
BBa_J23008 Version 1 (Component)
[key3c] riboregulator for lock3 variants
Public
RBS-spoVG
BBa_K143021 Version 1 (Component)
SpoVG ribosome binding site (RBS) for B. subtilis
Public
BBa_I13401
BBa_I13401 Version 1 (Component)
GFP reporter for RHS of library test constructs
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Public
iGEM 2018 Distribution
iGEM2018Distribution_collection Version 1 (Collection)
Distribution of parts for the 2018 iGEM competition
Public
iGEM 2019 Distribution
iGEM2019Distribution_collection Version 1 (Collection)
Distribution of parts for the 2019 iGEM competition
Public
scar
BBa_G0000 Version 1 (Component)
SpeI/XbaI scar for RBS-CDS junctions
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Public
BBa_K1114300
BBa_K1114300 Version 1 (Component)
This is the MoClo formatted part of BBa_B0015.
Public
amyE 5 IS
BBa_K143001 Version 1 (Component)
5??? Integration Sequence for the amyE locus of B. subtilis
Public
BBa_K880005
BBa_K880005 Version 1 (Component)
Strong promoter, strong RBS combination for high expression levels of proteins
Public
mCherry
BBa_J06505 Version 1 (Component)
monomeric RFP optimized for bacteria
Public
BBa_J70042
BBa_J70042 Version 1 (Component)
6his part for use with BioScaffold parts ATG-6his-GGATCC (glycine serine)
Public
ThiE
BBa_K558009 Version 1 (Component)
Thiamin monophosphate pyrophosphorylase
Public
BBa_K209400
BBa_K209400 Version 1 (Component)
AarI B-C part, hM4D
Public
BBa_S03119
BBa_S03119 Version 1 (Component)
--Specify Parts List--
Public
BsaI ->
BBa_K1362425 Version 1 (Component)
BsaI restriction site for RFC[???] cloning (in part in prefix)
Public
BBa_J70010
BBa_J70010 Version 1 (Component)
A BioScaffold Part (Uses PpiI), for offset see Part Design page
Public
iGEM 2019 Distribution Plate 6 Well 12B
iGEM_2019_Plate6_Well12B Version 1 (Collection)

Public
iGEM 2019 Distribution Plate 6 Well 22F
iGEM_2019_Plate6_Well22F Version 1 (Collection)

Public
iGEM 2019 Distribution Plate 6 Well 23D
iGEM_2019_Plate6_Well23D Version 1 (Collection)

Public
iGEM 2019 Distribution Plate 6 Well 23H
iGEM_2019_Plate6_Well23H Version 1 (Collection)

Public
iGEM 2018 Distribution Plate 7 Well 21J
iGEM_2018_Plate7_Well21J Version 1 (Collection)

Public
iGEM 2018 Distribution Plate 7 Well 21N
iGEM_2018_Plate7_Well21N Version 1 (Collection)

Public
iGEM 2019 Distribution Plate 4 Well 20H
iGEM_2019_Plate4_Well20H Version 1 (Collection)

Public
iGEM 2018 Distribution Plate 6 Well 20J
iGEM_2018_Plate6_Well20J Version 1 (Collection)

Public
iGEM 2019 Plasmid pSB3C01
iGEM_2019_Plasmid_pSB3C01 Version 1 (Collection)

Public
iGEM 2019 Distribution Plate 6 Well 22D
iGEM_2019_Plate6_Well22D Version 1 (Collection)

Public
iGEM 2019 Distribution Plate 6 Well 10P
iGEM_2019_Plate6_Well10P Version 1 (Collection)

Public
iGEM 2019 Distribution Plate 6 Well 14F
iGEM_2019_Plate6_Well14F Version 1 (Collection)

Public
iGEM 2019 Distribution Plate 6 Well 14B
iGEM_2019_Plate6_Well14B Version 1 (Collection)

Showing 1 - 50 of 3203 result(s)
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