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Public
Altered Sequence Activities
AlteredSequenceActivities_collection Version 1 (Unknown)
A set of activities to point to ways in which sequences have been altered between source and upload
Public
Excel2SBOL
Excel2SBOL_collection Version 1 (Unknown)
A collection of sbol that is used for the excel2sbol library
Public
sbks activities
sbksactivities_collection Version 1 (Unknown)
Activities linked to the SBKS project
Public
Composite Sequence Pull
Composite Version 1 (Unknown)
When multiple sources where combined to make a new part.
Public
Direct Sequence Pull
direct Version 1 (Unknown)
Used to indicate that a sequence was pulled directly from a source with no alterations made
Public
Sequence Pull with Mutations
mutations Version 1 (Unknown)
Used to indicate that a sequence had mutations added after pulling from the source and before submission
Public
Reverse Orientation Sequence Pull
reverse_orientation Version 1 (Unknown)
Used to indicate that a sequence's orientation was reversed (e.g. 3' to 5' becomes 5' to 3') after pulling from the source and before submission
Public
ACS Synbio Generation
ACS_Synbio_Generation Version 1 (Unknown)
Sequences pulled from the supplementals of the ACS Synthetic Biology journal as part of the SBKS project
Public
Truncated Sequence Pull
Truncated Version 1 (Unknown)
Used to indicate that a sequence was truncated after pulling from the source and before submission
Public
Codon Optimised Sequence Pull
codon_optimisation Version 1 (Unknown)
Used to indicate that a sequence was codon optimised after pulling from the source and before submission
Public
GC Optimised Sequence Pull
GC_Optimised Version 1 (Unknown)
Used to indicate that a sequence was GC optimised after pulling from the source and before submission
Public
Unknown Alteration Sequence Pull
Unknown Version 1 (Unknown)
Used to indicate that a sequence alteration was made between the source and the submission but the nature of the alteration is unknown
Public
Sequence Cut Out of Plasmid
cut_out_of_plasmid Version 1 (Unknown)
Used to indicate that a sequence was cut out of the plasmid referenced as the source
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Public
iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1
Public
SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1
Public
BBa_B0030
BBa_B0030 Version 1 (Component)
RBS.1 (strong) -- modified from R. Weiss
Public
BBa_B0034
BBa_B0034 Version 1 (Component)
RBS (Elowitz 1999) -- defines RBS efficiency
Public
Intein_assisted_Bisection_Mapping
Intein_assisted_Bisection_Mapping_collection Version 1 (Collection)
Split inteins are powerful tools for seamless ligation of synthetic split proteins. Yet, their use remains limited because the already intricate split site identification problem is often complicated by the requirement of extein junction sequences. To address this, we augmented a mini-Mu transposon-based screening approach and devised the intein-assisted bisection mapping (IBM) method. IBM robustly revealed clusters of split sites on five proteins, converting them into AND or NAND logic gates. We further showed that the use of inteins expands functional sequence space for splitting a protein. We also demonstrated the utility of our approach over rational inference of split sites from secondary structure alignment of homologous proteins. Furthermore, the intein inserted at an identified site could be engineered by the transposon again to become partially chemically inducible, and to some extent enabled post-translational tuning on host protein function. Our work offers a generalizable and systematic route towards creating split protein-intein fusions and conditional inteins for protein activity control.
Public
BBa_B0010
BBa_B0010 Version 1 (Component)
T1 from E. coli rrnB
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Public
//collections
collections Version 1 (Collection)

Public
BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7
Public
BBa_K1051006
BBa_K1051006 Version 1 (Component)
Saccharomycescerevisiae TBY-1 terminator with stopcodon
Public
spacer
BBa_B0040 Version 1 (Component)
Spacer.1 (generic)
Public
BBa_K1351028
BBa_K1351028 Version 1 (Component)
LMU Bacillus RBS collection 1
Public
Lock 1
BBa_J01010 Version 1 (Component)
Riboregulator Lock 1
Public
BBa_B0015
BBa_B0015 Version 1 (Component)
double terminator (B0010-B0012)
Public
BBa_K1351030
BBa_K1351030 Version 1 (Component)
LMU Bacillus RBS collection 3
Public
Key 1
BBa_J01008 Version 1 (Component)
Riboregulator key 1
Public
BBa_I712015
BBa_I712015 Version 1 (Component)
HIV-1 protease cleavage site
Public
BBa_K1351032
BBa_K1351032 Version 1 (Component)
LMU Bacillus RBS collection 5
Public
BBa_K1351031
BBa_K1351031 Version 1 (Component)
LMU Bacillus RBS collection 4
Public
BBa_K1351034
BBa_K1351034 Version 1 (Component)
LMU Bacillus RBS collection 7
Public
BBa_K1351033
BBa_K1351033 Version 1 (Component)
LMU Bacillus RBS collection 6
Public
BBa_K1351029
BBa_K1351029 Version 1 (Component)
LMU Bacillus RBS collection 2
Public
BBa_B0029
BBa_B0029 Version 1 (Component)
1 bp deletion from B0031
Public
RFC105 Z
BBa_K1362421 Version 1 (Component)
C-terminal stop overhang TAAT=STOP+1/3Stop RFC[105] overhang Z
Public
p(tetR)
BBa_R0040 Version 1 (Component)
TetR repressible promoter
Public
GFP
BBa_E0040 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212
Public
BBa_K165007
BBa_K165007 Version 1 (Component)
Gli-1 DNA-binding domain
Public
cI TP901
BBa_C0075 Version 1 (Component)
TP901 cI repressor from phage TP901-1 (+LVA)
Public
BBa_K1763440
BBa_K1763440 Version 1 (Component)
MaSp1/2[1:1]-12(1C3)
Public
BBa_K094120
BBa_K094120 Version 1 (Component)
pLacI/ara-1
Public
BBa_K315014
BBa_K315014 Version 1 (Component)
TetA (Optimized from bp 1 to 141)
Public
BBa_K879091
BBa_K879091 Version 1 (Component)
Upstream region 1
Public
BBa_K315015
BBa_K315015 Version 1 (Component)
TetA gene (DeOptimized from bp 1 to 141)
Public
BBa_K879092
BBa_K879092 Version 1 (Component)
Downstream region 1
Public
BBa_J202000
BBa_J202000 Version 1 (Component)
PBAD mutant#1
Public
BBa_K1713000
BBa_K1713000 Version 1 (Component)
Plac/ara-1, a hybrid promoter
Showing 1 - 50 of 2592 result(s)
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