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Public
iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1
Public
SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Public
BBa_B0034
BBa_B0034 Version 1 (Component)
RBS (Elowitz 1999) -- defines RBS efficiency
Public
BBa_B0012
BBa_B0012 Version 1 (Component)
TE from coliphageT7
Public
BBa_B0010
BBa_B0010 Version 1 (Component)
T1 from E. coli rrnB
Public
BBa_B0015
BBa_B0015 Version 1 (Component)
double terminator (B0010-B0012)
Public
p(tetR)
BBa_R0040 Version 1 (Component)
TetR repressible promoter
Public
GFP
BBa_E0040 Version 1 (Component)
green fluorescent protein derived from jellyfish Aequeora victoria wild-type GFP (SwissProt: P42212
Public
LacI
BBa_R0010 Version 1 (Component)
promoter (lacI regulated)
Public
BBa_B0030
BBa_B0030 Version 1 (Component)
RBS.1 (strong) -- modified from R. Weiss
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 2.2 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2.0 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Public
BBa_B0032
BBa_B0032 Version 1 (Component)
RBS.3 (medium) -- derivative of BBa_0030
Public
IBMc373_seq
IBMc373_seq Version 1 (Sequence)

Public
lacI+pL
BBa_R0011 Version 1 (Component)
Promoter (lacI regulated, lambda pL hybrid)
Public
mRFP1
BBa_E1010 Version 1 (Component)
**highly** engineered mutant of red fluorescent protein from Discosoma striata (coral)
Public
IBMc378_seq
IBMc378_seq Version 1 (Sequence)

Public
IBMc393_seq
IBMc393_seq Version 1 (Sequence)

Public
IBMc379_seq
IBMc379_seq Version 1 (Sequence)

Public
IBMc374_seq
IBMc374_seq Version 1 (Sequence)

Public
Intein_assisted_Bisection_Mapping
Intein_assisted_Bisection_Mapping_collection Version 1 (Collection)
Split inteins are powerful tools for seamless ligation of synthetic split proteins. Yet, their use remains limited because the already intricate split site identification problem is often complicated by the requirement of extein junction sequences. To address this, we augmented a mini-Mu transposon-based screening approach and devised the intein-assisted bisection mapping (IBM) method. IBM robustly revealed clusters of split sites on five proteins, converting them into AND or NAND logic gates. We further showed that the use of inteins expands functional sequence space for splitting a protein. We also demonstrated the utility of our approach over rational inference of split sites from secondary structure alignment of homologous proteins. Furthermore, the intein inserted at an identified site could be engineered by the transposon again to become partially chemically inducible, and to some extent enabled post-translational tuning on host protein function. Our work offers a generalizable and systematic route towards creating split protein-intein fusions and conditional inteins for protein activity control.
Public
IBMc337_seq
IBMc337_seq Version 1 (Sequence)

Public
IBMc372_seq
IBMc372_seq Version 1 (Sequence)

Public
IBMc370_seq
IBMc370_seq Version 1 (Sequence)

Public
IBMc371_seq
IBMc371_seq Version 1 (Sequence)

Public
IBMc473_seq
IBMc473_seq Version 1 (Sequence)

Public
IBMc323_seq
IBMc323_seq Version 1 (Sequence)

Public
IBMc333_seq
IBMc333_seq Version 1 (Sequence)

Public
IBMc383_seq
IBMc383_seq Version 1 (Sequence)

Public
tetR
BBa_C0040 Version 1 (Component)
tetracycline repressor from transposon Tn10 (+LVA)
Public
BBa_J23100
BBa_J23100 Version 1 (Component)
constitutive promoter family member
Public
scar
BBa_J176041 Version 1 (Component)
Silver scar
Public
lacI
BBa_C0012 Version 1 (Component)
lacI repressor from E. coli (+LVA)
Public
IBMc387_seq
IBMc387_seq Version 1 (Sequence)

Public
IBMc071_seq
IBMc071_seq Version 1 (Sequence)

Public
IBMc382_seq
IBMc382_seq Version 1 (Sequence)

Public
IBMc380_seq
IBMc380_seq Version 1 (Sequence)

Public
IBMc389_seq
IBMc389_seq Version 1 (Sequence)

Public
IBMc329_seq
IBMc329_seq Version 1 (Sequence)

Public
IBMc307_seq
IBMc307_seq Version 1 (Sequence)

Public
IBMc325_seq
IBMc325_seq Version 1 (Sequence)

Public
IBMc397_seq
IBMc397_seq Version 1 (Sequence)

Public
IBMc335_seq
IBMc335_seq Version 1 (Sequence)

Public
IBMc176_seq
IBMc176_seq Version 1 (Sequence)

Public
IBMc175_seq
IBMc175_seq Version 1 (Sequence)

Public
IBMc388_seq
IBMc388_seq Version 1 (Sequence)

Public
IBMc367_seq
IBMc367_seq Version 1 (Sequence)

Public
IBMc330_seq
IBMc330_seq Version 1 (Sequence)

Public
IBMc369_seq
IBMc369_seq Version 1 (Sequence)

Showing 1 - 50 of 362 result(s)
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