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Public
iGEM to SBOL conversion
igem2sbol Version 1 (Activity)
Conversion of the iGEM parts registry to SBOL2.1
Public
SyBiOntKB to SBOL conversion
SyBiOntKB2sbol Version 1 (Activity)
Conversion of the Synthetic Biology Ontology knowledge base to SBOL 2.1
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 3.0 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are SynBioHub integration, local repositories, importing of parts/sequences from existing files, import and export of GenBank and FASTA files, extended role ontology support, the ability to partially open designs with multiple root ComponentDefinitions, backward compatibility with SBOL 1.1, and versioning.
Public
SBOLDesigner CAD Tool
SBOLDesigner Version 3.1 (Agent)
SBOLDesigner is a simple, biologist-friendly CAD software tool for creating and manipulating the sequences of genetic constructs using the Synthetic Biology Open Language (SBOL) 2 data model. Throughout the design process, SBOL Visual symbols, a system of schematic glyphs, provide standardized visualizations of individual parts. SBOLDesigner completes a workflow for users of genetic design automation tools. It combines a simple user interface with the power of the SBOL standard and serves as a launchpad for more detailed designs involving simulations and experiments. Some new features in SBOLDesigner are the ability to add variant collections to combinatorial derivations, enumerating those collections, and the ability to view sequence features hierarchically. There are also some small changes to the way that preferences work in regards to saving a design with incomplete sequences.
Public
IBMc410_seq
IBMc410_seq Version 1 (Sequence)

Public
IBMc415_seq
IBMc415_seq Version 1 (Sequence)

Public
IBMc417_seq
IBMc417_seq Version 1 (Sequence)

Public
IBMc450_seq
IBMc450_seq Version 1 (Sequence)

Public
IBMc400_seq
IBMc400_seq Version 1 (Sequence)

Public
IBMc414_seq
IBMc414_seq Version 1 (Sequence)

Public
IBMc416_seq
IBMc416_seq Version 1 (Sequence)

Public
IBMc460_seq
IBMc460_seq Version 1 (Sequence)

Public
Intein_assisted_Bisection_Mapping
Intein_assisted_Bisection_Mapping_collection Version 1 (Collection)
Split inteins are powerful tools for seamless ligation of synthetic split proteins. Yet, their use remains limited because the already intricate split site identification problem is often complicated by the requirement of extein junction sequences. To address this, we augmented a mini-Mu transposon-based screening approach and devised the intein-assisted bisection mapping (IBM) method. IBM robustly revealed clusters of split sites on five proteins, converting them into AND or NAND logic gates. We further showed that the use of inteins expands functional sequence space for splitting a protein. We also demonstrated the utility of our approach over rational inference of split sites from secondary structure alignment of homologous proteins. Furthermore, the intein inserted at an identified site could be engineered by the transposon again to become partially chemically inducible, and to some extent enabled post-translational tuning on host protein function. Our work offers a generalizable and systematic route towards creating split protein-intein fusions and conditional inteins for protein activity control.
Public
IBMc401_seq
IBMc401_seq Version 1 (Sequence)

Public
IBMc411_seq
IBMc411_seq Version 1 (Sequence)

Public
IBMc413_seq
IBMc413_seq Version 1 (Sequence)

Public
IBMc418_seq
IBMc418_seq Version 1 (Sequence)

Public
IBMc470_seq
IBMc470_seq Version 1 (Sequence)

Public
IBMc420_seq
IBMc420_seq Version 1 (Sequence)

Public
IBMc480_seq
IBMc480_seq Version 1 (Sequence)

Public
IBMc412_seq
IBMc412_seq Version 1 (Sequence)

Public
IBMc419_seq
IBMc419_seq Version 1 (Sequence)

Public
IBMc456_seq
IBMc456_seq Version 1 (Sequence)

Public
IBMc451_seq
IBMc451_seq Version 1 (Sequence)

Public
IBMc330_seq
IBMc330_seq Version 1 (Sequence)

Public
IBMc403_seq
IBMc403_seq Version 1 (Sequence)

Public
IBMc453_seq
IBMc453_seq Version 1 (Sequence)

Public
IBMc370_seq
IBMc370_seq Version 1 (Sequence)

Public
IBMc180_seq
IBMc180_seq Version 1 (Sequence)

Public
IBMc457_seq
IBMc457_seq Version 1 (Sequence)

Public
IBMc454_seq
IBMc454_seq Version 1 (Sequence)

Public
IBMc446_seq
IBMc446_seq Version 1 (Sequence)

Public
IBMc090_seq
IBMc090_seq Version 1 (Sequence)

Public
IBMc449_seq
IBMc449_seq Version 1 (Sequence)

Public
IBMc402_seq
IBMc402_seq Version 1 (Sequence)

Public
IBMc421_seq
IBMc421_seq Version 1 (Sequence)

Public
IBMc390_seq
IBMc390_seq Version 1 (Sequence)

Public
IBMc447_seq
IBMc447_seq Version 1 (Sequence)

Public
IBMc318_seq
IBMc318_seq Version 1 (Sequence)

Public
IBMc406_seq
IBMc406_seq Version 1 (Sequence)

Public
IBMc405_seq
IBMc405_seq Version 1 (Sequence)

Public
IBMc190_seq
IBMc190_seq Version 1 (Sequence)

Public
BBa_B0034
BBa_B0034 Version 1 (Component)
RBS (Elowitz 1999) -- defines RBS efficiency
Public
IBMc409_seq
IBMc409_seq Version 1 (Sequence)

Public
IBMc423_seq
IBMc423_seq Version 1 (Sequence)

Public
IBMc101_seq
IBMc101_seq Version 1 (Sequence)

Public
IBMc360_seq
IBMc360_seq Version 1 (Sequence)

Public
IBMc424_seq
IBMc424_seq Version 1 (Sequence)

Public
IBMc407_seq
IBMc407_seq Version 1 (Sequence)

Public
IBMc120_seq
IBMc120_seq Version 1 (Sequence)

Showing 1 - 50 of 356 result(s)
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