GFP-AID

BBa_K812110 Version 1

Component

This part has been discontinued.

Please consider using BBa_K812010 as a replacement.

Source:
http://parts.igem.org/Part:BBa_K812110
Generated By: https://synbiohub.org/public/igem/igem2sbol/1
Created by: Pierre Parutto
Date created: 2012-09-19 11:00:00
Date modified: 2015-05-08 01:13:27

GFP fusion with the ubuquitinase E3 OsTirI recoginition domain for PSC2+ plasmid



Types
DnaRegion

Roles
engineered_region

Device

Sequences BBa_K812110_sequence (Version 1)

Description

This part is a super folded GFP fused to an AID tag for its recignition by the ubiquitinase E3 that induces its degradation in the presence of auxin in the eukaryote cell.

This part is a part of a device pattented by Kanemaki Masato, Kakimoto Tatsuo, Nishimura Kohei, Takisawa Haruhiko and Fukagawa Tatsuo for yeast and mammalian cells use (http://www.freepatentsonline.com/y2012/0115232.html). However the pattent does not cover the use for oviparian such as frogs and chicken.

The GFP-AID contains 2 NLS domains that relocate the protein in the nucleus of the cells for a better signal concentration.

This part can be used in an oviparian plasmid such as pSC2+ (see K812000)

Notes

This part has been biobricked using PCR method and cloned in pSB1C3.

Source

The source plasmid was provided in K. Nishimura, T. Fukagawa, H. Takisawa, T. Kakimoto, and M. Kane-
maki. An auxin-based degron system for the rapid depletion of proteins in nonplant cells. Nature methods, 6(12) :917???922, 2009.

Sequence Annotation Location Component / Role(s)
Kozac
GFP
unfolded linker
AID degradation tag
NLS1
NLS2
1,6
7,723
724,756
757,1443
1444,1479
1480,1500
feature/start start_codon
CDS feature/protein
CDS feature/protein
CDS feature/protein
CDS feature/protein
CDS feature/protein
igem#experience
Works
 
igem#partStatus
Released HQ 2013
igem#sampleStatus
Discontinued
igem#status
Deleted
 
isReplacedBy
BBa_K812010/1
 
synbiohub#ownedBy
user/james
 
synbiohub#ownedBy
user/myers
 
synbiohub#topLevel
BBa_K812110/1